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feat: add sync command to write data to sqlite

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Introduce sqlalchemy as a dep so that we can store and sync data from
the ring over time. This add a db module that contains ORM models and
functions to write data to the database

I also got sick of all the date stuff so I added date_utils as a module
to keep everything in one place.
This commit is contained in:
Wesley Ellis 2024-11-15 16:59:43 -05:00
parent 175b28c031
commit dccd04a212
12 changed files with 1086 additions and 219 deletions
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1
.gitignore vendored
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@ -1,3 +1,4 @@
captures/*.bin captures/*.bin
*.sqlite
.hypothesis .hypothesis
dist/ dist/

64
colmi_r02_client/cli.py
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@ -4,7 +4,7 @@ A python client for connecting to the Colmi R02 Smart ring
import csv import csv
import dataclasses import dataclasses
from datetime import datetime, timezone from datetime import datetime, timezone, timedelta
from io import StringIO from io import StringIO
from pathlib import Path from pathlib import Path
import logging import logging
@ -14,8 +14,7 @@ import asyncclick as click
from bleak import BleakScanner from bleak import BleakScanner
from colmi_r02_client.client import Client from colmi_r02_client.client import Client
from colmi_r02_client.hr import HeartRateLog from colmi_r02_client import steps, pretty_print, db, date_utils, hr
from colmi_r02_client import steps, pretty_print
logging.basicConfig(level=logging.WARNING, format="%(name)s: %(message)s") logging.basicConfig(level=logging.WARNING, format="%(name)s: %(message)s")
@ -86,10 +85,10 @@ async def get_heart_rate_log(client: Client, target: datetime) -> None:
async with client: async with client:
log = await client.get_heart_rate_log(target) log = await client.get_heart_rate_log(target)
print("Data:", log) print("Data:", log)
if isinstance(log, HeartRateLog): if isinstance(log, hr.HeartRateLog):
for hr, ts in log.heart_rates_with_times(): for reading, ts in log.heart_rates_with_times():
if hr != 0: if reading != 0:
print(f"{ts.strftime('%H:%M')}, {hr}") print(f"{ts.strftime('%H:%M')}, {reading}")
@cli_client.command() @cli_client.command()
@ -224,6 +223,57 @@ async def raw(client: Client, command: int, subdata: str | None, replies: int) -
click.echo(results) click.echo(results)
@cli_client.command()
@click.pass_obj
@click.option(
"--db",
"db_path",
type=click.Path(writable=True, path_type=Path),
help="Path to a directory or file to use as the database. If dir, then filename will be ring_data.sqlite",
)
@click.option(
"--start",
type=click.DateTime(),
required=False,
help="The date you want to start grabbing data from",
)
@click.option(
"--end",
type=click.DateTime(),
required=False,
help="The date you want to start grabbing data to",
)
async def sync(client: Client, db_path: Path | None, start: datetime | None, end: datetime | None) -> None:
"""
Sync all data from the ring to a sqlite database
Currently grabs:
- heart rates
"""
if db_path is None:
db_path = Path.cwd()
if db_path.is_dir():
db_path /= Path("ring_data.sqlite")
click.echo(f"Writing to {db_path}")
with db.get_db_session(db_path) as session:
if start is None:
start = db.get_last_sync(session)
if start is None:
start = date_utils.now() - timedelta(days=7)
if end is None:
end = date_utils.now()
click.echo(f"Syncing from {start} to {end}")
async with client:
fd = await client.get_full_data(start, end)
db.sync(session, fd)
click.echo("Done")
DEVICE_NAME_PREFIXES = [ DEVICE_NAME_PREFIXES = [
"R01", "R01",
"R02", "R02",

25
colmi_r02_client/client.py
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@ -1,6 +1,7 @@
import asyncio import asyncio
from collections.abc import Callable from collections.abc import Callable
from datetime import datetime, timezone from datetime import datetime, timezone
from dataclasses import dataclass
import logging import logging
from pathlib import Path from pathlib import Path
from types import TracebackType from types import TracebackType
@ -11,6 +12,7 @@ from bleak.backends.characteristic import BleakGATTCharacteristic
from colmi_r02_client import ( from colmi_r02_client import (
battery, battery,
date_utils,
real_time_hr, real_time_hr,
steps, steps,
set_time, set_time,
@ -41,6 +43,13 @@ def log_packet(packet: bytearray) -> None:
print("received: ", packet) print("received: ", packet)
# TODO move this maybe?
@dataclass
class FullData:
address: str
heart_rates: list[hr.HeartRateLog | hr.NoData]
COMMAND_HANDLERS: dict[int, Callable[[bytearray], Any]] = { COMMAND_HANDLERS: dict[int, Callable[[bytearray], Any]] = {
battery.CMD_BATTERY: battery.parse_battery, battery.CMD_BATTERY: battery.parse_battery,
real_time_hr.CMD_START_HEART_RATE: real_time_hr.parse_heart_rate, real_time_hr.CMD_START_HEART_RATE: real_time_hr.parse_heart_rate,
@ -80,6 +89,9 @@ class Client:
exc_val: BaseException | None, exc_val: BaseException | None,
exc_tb: TracebackType | None, exc_tb: TracebackType | None,
) -> None: ) -> None:
logger.info("Disconnecting")
if exc_val is not None:
logger.error("had an error")
await self.disconnect() await self.disconnect()
async def connect(self): async def connect(self):
@ -189,7 +201,7 @@ class Client:
async def get_heart_rate_log(self, target: datetime | None = None) -> hr.HeartRateLog | hr.NoData: async def get_heart_rate_log(self, target: datetime | None = None) -> hr.HeartRateLog | hr.NoData:
if target is None: if target is None:
target = datetime.now(timezone.utc).replace(hour=0, minute=0, second=0) target = date_utils.start_of_day(date_utils.now())
await self.send_packet(hr.read_heart_rate_packet(target)) await self.send_packet(hr.read_heart_rate_packet(target))
return await asyncio.wait_for( return await asyncio.wait_for(
self.queues[hr.CMD_READ_HEART_RATE].get(), self.queues[hr.CMD_READ_HEART_RATE].get(),
@ -246,3 +258,14 @@ class Client:
replies -= 1 replies -= 1
return results return results
async def get_full_data(self, start: datetime, end: datetime) -> FullData:
"""
Fetches all data from the ring between start and end. Useful for syncing.
"""
logs = []
for d in date_utils.dates_between(start, end):
logs.append(await self.get_heart_rate_log(d))
return FullData(self.address, logs)

67
colmi_r02_client/date_utils.py Normal file
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@ -0,0 +1,67 @@
from datetime import datetime, timedelta, timezone
from typing import Iterator
import pytest
def start_of_day(ts: datetime) -> datetime:
return ts.replace(hour=0, minute=0, second=0, microsecond=0)
def end_of_day(ts: datetime) -> datetime:
return start_of_day(ts) + timedelta(days=1, microseconds=-1)
def dates_between(start: datetime, end: datetime) -> Iterator[datetime]:
"""generator for all days between start and end. totally ignores the hours, minutes, seconds and timezones"""
td: timedelta = end - start
if td.days < 0:
raise ValueError("start is after end")
for i in range(td.days + 1):
d = start + timedelta(days=i)
yield d
def test_dates_between_one():
dt = datetime(2024, 11, 11)
assert [dt] == list(dates_between(dt, dt))
def test_dates_between_two():
start = datetime(2024, 11, 11)
end = datetime(2024, 11, 12)
assert [start, end] == list(dates_between(start, end))
def test_dates_between_many():
start = datetime(2024, 10, 11)
end = datetime(2024, 10, 14)
assert [start, datetime(2024, 10, 12), datetime(2024, 10, 13), end] == list(dates_between(start, end))
def test_dates_between_end_before_start():
start = datetime(2024, 11, 12)
end = datetime(2024, 11, 11)
with pytest.raises(ValueError):
list(dates_between(start, end))
def now() -> datetime:
return datetime.now(tz=timezone.utc)
def minutes_so_far(dt: datetime) -> int:
"""
Return the number of minutes elapsed in the day so far plus 1.
I don't know why it's off by one, it just is.
"""
midnight = datetime(dt.year, dt.month, dt.day, tzinfo=dt.tzinfo).timestamp()
delta = dt.timestamp() - midnight # seconds since midnight
return round(delta / 60) + 1
def is_today(ts: datetime) -> bool:
n = now()
return bool(ts.year == n.year and ts.month == n.month and ts.day == n.day)

166
colmi_r02_client/db.py Normal file
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@ -0,0 +1,166 @@
from datetime import datetime, timezone
from pathlib import Path
import logging
from typing import Any
from sqlalchemy.orm import DeclarativeBase, Mapped, mapped_column, Session, relationship
from sqlalchemy import select, UniqueConstraint, ForeignKey, create_engine, event, func, types
from sqlalchemy.engine import Engine, Dialect
from colmi_r02_client import hr
from colmi_r02_client.client import FullData
from colmi_r02_client.date_utils import start_of_day, end_of_day
logger = logging.getLogger(__name__)
class Base(DeclarativeBase):
pass
class DateTimeInUTC(types.TypeDecorator):
"""
TypeDecorator for sqlalchemy that will:
1. make sure that you cannot save datetimes with no tzinfo/timezone
2. convert any datetime to utc before saving it
3. add the utc timezone to all datetimes retrieved from the database
"""
impl = types.DateTime
cache_ok = True
def process_bind_param(self, value: Any | None, _dialect: Dialect) -> datetime | None:
if value is None:
return None
if not isinstance(value, datetime):
raise ValueError(f"Trying to store {value} that's not a datetime")
if value.tzinfo is None:
raise ValueError(f"Trying to store {value} with no timezone")
return value.astimezone(timezone.utc)
def process_result_value(self, value: Any | None, _dialect: Dialect) -> datetime | None:
if value is None:
return None
if not isinstance(value, datetime):
raise ValueError(f"Trying to add timezone to {value} that's not a datetime")
if value.tzinfo is None:
return value.replace(tzinfo=timezone.utc)
return value.astimezone(timezone.utc)
class Ring(Base):
__tablename__ = "rings"
__table_args__ = (UniqueConstraint("address"),)
ring_id: Mapped[int] = mapped_column(primary_key=True)
address: Mapped[str]
heart_rates: Mapped[list["HeartRate"]] = relationship(back_populates="ring")
syncs: Mapped[list["Sync"]] = relationship(back_populates="ring")
class Sync(Base):
__tablename__ = "syncs"
sync_id: Mapped[int] = mapped_column(primary_key=True)
ring_id = mapped_column(ForeignKey("rings.ring_id"), nullable=False)
timestamp = mapped_column(DateTimeInUTC(timezone=True), nullable=False)
comment: Mapped[str | None]
ring: Mapped["Ring"] = relationship(back_populates="syncs")
heart_rates: Mapped[list["HeartRate"]] = relationship(back_populates="sync")
class HeartRate(Base):
__tablename__ = "heart_rates"
__table_args__ = (UniqueConstraint("ring_id", "timestamp"),)
heart_rate_id: Mapped[int] = mapped_column(primary_key=True)
reading: Mapped[int]
timestamp = mapped_column(DateTimeInUTC(timezone=True), nullable=False)
ring_id = mapped_column(ForeignKey("rings.ring_id"), nullable=False)
ring: Mapped["Ring"] = relationship(back_populates="heart_rates")
sync_id = mapped_column(ForeignKey("syncs.sync_id"), nullable=False)
sync: Mapped["Sync"] = relationship(back_populates="heart_rates")
@event.listens_for(Engine, "connect")
def set_sqlite_pragma(dbapi_connection: Any, _connection_record: Any) -> None:
"""Enable actual foreign key checks in sqlite on every connection to the database"""
cursor = dbapi_connection.cursor()
cursor.execute("PRAGMA foreign_keys=ON")
cursor.close()
def get_db_session(path: Path | None = None) -> Session:
"""
Return a live db session with all tables created.
TODO: probably not default to in memory... that's just useful for testing
"""
url = "sqlite:///"
if path is not None:
url = url + str(path)
else:
logger.info("Using in memory sqlite database. Data will be lost after program exits")
url = url + ":memory:"
engine = create_engine(url, echo=False)
Base.metadata.create_all(engine)
return Session(engine)
def create_or_find_ring(session: Session, address: str) -> Ring:
ring = session.scalars(select(Ring).where(Ring.address == address)).one_or_none()
if ring is not None:
return ring
ring = Ring(address=address)
session.add(ring)
session.commit() # not sure this should be here tbh
return ring
def sync(session: Session, data: FullData) -> None:
"""
TODO:
- grab battery
- grab steps
"""
ring = create_or_find_ring(session, data.address)
sync = Sync(ring=ring, timestamp=datetime.now(tz=timezone.utc))
session.add(sync)
for log in data.heart_rates:
if isinstance(log, hr.NoData):
logger.info("No heart rate data for date")
continue
existing = {}
for heart_rate in session.scalars(
select(HeartRate)
.where(HeartRate.timestamp >= start_of_day(log.timestamp))
.where(HeartRate.timestamp <= end_of_day(log.timestamp))
):
existing[heart_rate.timestamp] = heart_rate.reading
for reading, timestamp in log.heart_rates_with_times():
if reading == 0:
continue
if x := existing.get(timestamp):
if x != reading:
logger.warning(f"Inconsistent data detected! {timestamp} is {x} in db but got {reading} from ring")
else:
h = HeartRate(reading=reading, timestamp=timestamp, ring=ring, sync=sync)
session.add(h)
session.commit()
def get_last_sync(session: Session) -> datetime | None:
return session.scalars(func.max(Sync.timestamp)).one_or_none()

20
colmi_r02_client/hr.py
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@ -6,6 +6,7 @@ import logging
import struct import struct
from colmi_r02_client.packet import make_packet from colmi_r02_client.packet import make_packet
from colmi_r02_client import date_utils
CMD_READ_HEART_RATE = 21 # 0x15 CMD_READ_HEART_RATE = 21 # 0x15
@ -19,22 +20,10 @@ def read_heart_rate_packet(target: datetime) -> bytearray:
return make_packet(CMD_READ_HEART_RATE, data) return make_packet(CMD_READ_HEART_RATE, data)
def _minutes_so_far(dt: datetime) -> int:
"""
Return the number of minutes elapsed in the day so far plus 1.
I don't know why it's off by one, it just is.
"""
midnight = datetime(dt.year, dt.month, dt.day, tzinfo=dt.tzinfo).timestamp()
delta = dt.timestamp() - midnight # seconds since midnight
return round(delta / 60) + 1
def _add_times(heart_rates: list[int], ts: datetime) -> list[tuple[int, datetime]]: def _add_times(heart_rates: list[int], ts: datetime) -> list[tuple[int, datetime]]:
assert len(heart_rates) == 288, "Need exactly 288 points at 5 minute intervals" assert len(heart_rates) == 288, "Need exactly 288 points at 5 minute intervals"
result = [] result = []
m = datetime(ts.year, ts.month, ts.day) m = datetime(ts.year, ts.month, ts.day, tzinfo=ts.tzinfo)
five_min = timedelta(minutes=5) five_min = timedelta(minutes=5)
for hr in heart_rates: for hr in heart_rates:
result.append((hr, m)) result.append((hr, m))
@ -75,8 +64,7 @@ class HeartRateLogParser:
d = self.timestamp d = self.timestamp
if d is None: if d is None:
return False return False
now = datetime.now(tz=timezone.utc) # use utc time return date_utils.is_today(d)
return bool(d.year == now.year and d.month == now.month and d.day == now.day)
def parse(self, packet: bytearray) -> HeartRateLog | NoData | None: def parse(self, packet: bytearray) -> HeartRateLog | NoData | None:
r""" r"""
@ -160,7 +148,7 @@ class HeartRateLogParser:
# need a good reason why parsing should depend on the day # need a good reason why parsing should depend on the day
# index might be good enough to indicate how much "valid" data we've gotten # index might be good enough to indicate how much "valid" data we've gotten
if self.is_today(): if self.is_today():
m = _minutes_so_far(datetime.now(tz=timezone.utc)) // 5 m = date_utils.minutes_so_far(datetime.now(tz=timezone.utc)) // 5
hr[m:] = [0] * len(hr[m:]) hr[m:] = [0] * len(hr[m:])
return hr return hr

533
poetry.lock generated
View File

@ -1,14 +1,14 @@
# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
[[package]] [[package]]
name = "anyio" name = "anyio"
version = "4.4.0" version = "4.6.2.post1"
description = "High level compatibility layer for multiple asynchronous event loop implementations" description = "High level compatibility layer for multiple asynchronous event loop implementations"
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.9"
files = [ files = [
{file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"}, {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"},
{file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"}, {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"},
] ]
[package.dependencies] [package.dependencies]
@ -16,9 +16,9 @@ idna = ">=2.8"
sniffio = ">=1.1" sniffio = ">=1.1"
[package.extras] [package.extras]
doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"]
trio = ["trio (>=0.23)"] trio = ["trio (>=0.26.1)"]
[[package]] [[package]]
name = "asyncclick" name = "asyncclick"
@ -114,39 +114,43 @@ files = [
[[package]] [[package]]
name = "dbus-fast" name = "dbus-fast"
version = "2.22.1" version = "2.24.3"
description = "A faster version of dbus-next" description = "A faster version of dbus-next"
optional = false optional = false
python-versions = "<4.0,>=3.8" python-versions = "<4.0,>=3.8"
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[[package]] [[package]]
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]
[package.dependencies]
greenlet = {version = "!=0.4.17", markers = "python_version < \"3.13\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
typing-extensions = ">=4.6.0"
[package.extras]
aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
aioodbc = ["aioodbc", "greenlet (!=0.4.17)"]
aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
asyncio = ["greenlet (!=0.4.17)"]
asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5,!=1.1.10)"]
mssql = ["pyodbc"]
mssql-pymssql = ["pymssql"]
mssql-pyodbc = ["pyodbc"]
mypy = ["mypy (>=0.910)"]
mysql = ["mysqlclient (>=1.4.0)"]
mysql-connector = ["mysql-connector-python"]
oracle = ["cx_oracle (>=8)"]
oracle-oracledb = ["oracledb (>=1.0.1)"]
postgresql = ["psycopg2 (>=2.7)"]
postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
postgresql-pg8000 = ["pg8000 (>=1.29.1)"]
postgresql-psycopg = ["psycopg (>=3.0.7)"]
postgresql-psycopg2binary = ["psycopg2-binary"]
postgresql-psycopg2cffi = ["psycopg2cffi"]
postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
pymysql = ["pymysql"]
sqlcipher = ["sqlcipher3_binary"]
[[package]] [[package]]
name = "typing-extensions" name = "typing-extensions"
version = "4.12.2" version = "4.12.2"
@ -894,4 +1089,4 @@ all = ["winrt-Windows.Foundation.Collections[all] (==2.3.0)", "winrt-Windows.Fou
[metadata] [metadata]
lock-version = "2.0" lock-version = "2.0"
python-versions = ">=3.11,<3.14" python-versions = ">=3.11,<3.14"
content-hash = "94057db201c29351daf90a599bdc054ed322684e76d79e0f62043ca5f1dec1c9" content-hash = "a57ffd2e85f3c62bda2d5d7d485a2071acae8c80ce27eb5471177c48e38f631e"

1
pyproject.toml
View File

@ -9,6 +9,7 @@ readme = "README.md"
python = ">=3.11,<3.14" python = ">=3.11,<3.14"
bleak = "^0.22.2" bleak = "^0.22.2"
asyncclick = "^8.1.7.2" asyncclick = "^8.1.7.2"
sqlalchemy = "^2.0.36"
[tool.poetry.scripts] [tool.poetry.scripts]
colmi_r02_client = "colmi_r02_client.cli:cli_client" colmi_r02_client = "colmi_r02_client.cli:cli_client"

27
tests/database_schema.sql Normal file
View File

@ -0,0 +1,27 @@
CREATE TABLE rings (
ring_id INTEGER NOT NULL,
address VARCHAR NOT NULL,
PRIMARY KEY (ring_id),
UNIQUE (address)
)
CREATE TABLE syncs (
sync_id INTEGER NOT NULL,
comment VARCHAR,
ring_id INTEGER NOT NULL,
timestamp DATETIME NOT NULL,
PRIMARY KEY (sync_id),
FOREIGN KEY(ring_id) REFERENCES rings (ring_id)
)
CREATE TABLE heart_rates (
heart_rate_id INTEGER NOT NULL,
reading INTEGER NOT NULL,
timestamp DATETIME NOT NULL,
ring_id INTEGER NOT NULL,
sync_id INTEGER NOT NULL,
PRIMARY KEY (heart_rate_id),
UNIQUE (ring_id, timestamp),
FOREIGN KEY(ring_id) REFERENCES rings (ring_id),
FOREIGN KEY(sync_id) REFERENCES syncs (sync_id)
)

59
tests/test_date_utils.py Normal file
View File

@ -0,0 +1,59 @@
from datetime import datetime, timedelta, timezone
from freezegun import freeze_time
from hypothesis import given, strategies as st
from colmi_r02_client.date_utils import start_of_day, end_of_day, minutes_so_far, is_today
@given(st.datetimes(timezones=st.timezones()))
def test_start_of_day(ts: datetime):
x = start_of_day(ts)
assert x.hour == 0
assert x.minute == 0
assert x.second == 0
assert x.microsecond == 0
@given(st.datetimes(timezones=st.timezones()))
def test_end_of_day(ts: datetime):
x = end_of_day(ts)
assert x.hour == 23
assert x.minute == 59
assert x.second == 59
assert x.microsecond == 999999
@freeze_time("2024-01-01")
def test_is_today_today():
d = datetime(2024, 1, 1, 1, 1, 0)
assert is_today(d)
@freeze_time("2024-01-02")
def test_is_today_not_today():
d = datetime(2024, 1, 1, 1, 1, 0)
assert not is_today(d)
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_midnight(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, tzinfo=tz)
assert minutes_so_far(x) == 1
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_minutes(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, 0, 15, tzinfo=tz)
assert minutes_so_far(x) == 16
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_day(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, 23, 59, tzinfo=tz)
assert minutes_so_far(x) == 1440

312
tests/test_db.py Normal file
View File

@ -0,0 +1,312 @@
from datetime import datetime, timezone
import os
from pathlib import Path
from unittest.mock import create_autospec
from hypothesis import given, strategies as st
import pytest
from sqlalchemy import text, select, func, Dialect
from sqlalchemy.exc import IntegrityError
from colmi_r02_client.client import FullData
from colmi_r02_client import hr
from colmi_r02_client.db import (
get_db_session,
create_or_find_ring,
sync,
Ring,
HeartRate,
Sync,
get_last_sync,
DateTimeInUTC,
)
def test_get_db_session_memory():
with get_db_session() as session:
assert session.scalars(text("SELECT 1")).one() == 1
def test_get_db_session_file(tmp_path: Path):
db_file = tmp_path / "test.sqlite"
assert not db_file.exists()
with get_db_session(db_file) as session:
assert session.scalars(text("SELECT 1")).one() == 1
assert db_file.exists()
def test_get_db_tables_exist():
with get_db_session() as session:
tables = set(session.scalars(text("SELECT name FROM sqlite_master WHERE type ='table'")).fetchall())
assert tables == {
"rings",
"syncs",
"heart_rates",
}
def test_get_db_schema():
"""
I want to have each table schema in a spot that's
easy to update but also see. Maybe in a .sql file?
"""
schema_path = Path("tests/database_schema.sql")
expected = schema_path.read_text()
with get_db_session() as session:
actual = "\n\n".join(session.scalars(text("SELECT sql FROM sqlite_schema where type = 'table'")).fetchall())
if actual != expected:
if os.getenv("UPDATE_SCHEMA", None):
schema_path.write_text(actual)
pytest.fail("Test failed because we rewrote the schema file")
else:
assert actual == expected, "Schema mismatch, if this is expected rerun with UPDATE_SCHEMA=1"
def test_create_new_ring():
with get_db_session() as session:
address = "address"
ring = create_or_find_ring(session, address)
assert ring.address == address
def test_fetch_old_ring():
with get_db_session() as session:
address = "address"
new_ring = create_or_find_ring(session, address)
old_ring = create_or_find_ring(session, address)
assert old_ring == new_ring
assert old_ring.address == address
def test_ring_sync_id_required_for_heart_rate():
with get_db_session() as session, pytest.raises(IntegrityError):
session.add(HeartRate(reading=1, timestamp=datetime(2024, 1, 1, tzinfo=timezone.utc), ring_id=None, sync_id=None))
session.commit()
def test_sync_creates_ring():
address = "fake"
fd = FullData(address=address, heart_rates=[])
with get_db_session() as session:
sync(session, fd)
ring = session.scalars(select(Ring)).one()
assert address == ring.address
def test_sync_uses_existing_ring():
address = "fake"
fd = FullData(address=address, heart_rates=[])
with get_db_session() as session:
create_or_find_ring(session, address)
sync(session, fd)
assert session.scalars(func.count(Ring.ring_id)).one() == 1
def test_sync_creates_sync():
address = "fake"
fd = FullData(address=address, heart_rates=[])
with get_db_session() as session:
sync(session, fd)
sync_obj = session.scalars(select(Sync)).one()
assert sync_obj.ring.address == address
def test_sync_writes_heart_rates():
address = "fake"
hrl = hr.HeartRateLog(
heart_rates=[80] * 288,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd = FullData(address=address, heart_rates=[hrl])
with get_db_session() as session:
sync(session, fd)
ring = session.scalars(select(Ring)).one()
logs = session.scalars(select(HeartRate)).all()
sync_obj = session.scalars(select(Sync)).one()
assert len(logs) == 288
assert logs[0].ring_id == ring.ring_id
assert logs[0].reading == 80
assert logs[0].timestamp == datetime(2024, 11, 11, 0, 0, tzinfo=timezone.utc)
assert logs[1].timestamp == datetime(2024, 11, 11, 0, 5, tzinfo=timezone.utc)
assert logs[0].sync_id == sync_obj.sync_id
def test_sync_writes_heart_rates_only_non_zero_heart_rates():
address = "fake"
hrl = hr.HeartRateLog(
heart_rates=[80] * 8 + [0] * 280,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd = FullData(address=address, heart_rates=[hrl])
with get_db_session() as session:
sync(session, fd)
logs = session.scalars(select(HeartRate)).all()
assert len(logs) == 8
def test_sync_writes_heart_rates_once():
address = "fake"
hrl_1 = hr.HeartRateLog(
heart_rates=[80] * 8 + [0] * 280,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd_1 = FullData(address=address, heart_rates=[hrl_1])
hrl_2 = hr.HeartRateLog(
heart_rates=[80] * 288,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd_2 = FullData(address=address, heart_rates=[hrl_2])
with get_db_session() as session:
sync(session, fd_1)
sync(session, fd_2)
logs = session.scalars(select(HeartRate)).all()
assert len(logs) == 288
def test_sync_handles_inconsistent_data(caplog):
address = "fake"
hrl_1 = hr.HeartRateLog(
heart_rates=[80] * 288,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd_1 = FullData(address=address, heart_rates=[hrl_1])
hrl_2 = hr.HeartRateLog(
heart_rates=[90] * 288,
timestamp=datetime(2024, 11, 11, 11, 11, tzinfo=timezone.utc),
size=24,
index=295,
range=5,
)
fd_2 = FullData(address=address, heart_rates=[hrl_2])
with get_db_session() as session:
sync(session, fd_1)
sync(session, fd_2)
logs = session.scalars(select(HeartRate)).all()
assert len(logs) == 288
assert all(log.reading == 80 for log in logs)
assert "Inconsistent data detected! 2024-11-11 00:00:00+00:00 is 80 in db but got 90 from ring" in caplog.text
def test_get_last_sync_never():
with get_db_session() as session:
assert get_last_sync(session) is None
def test_get_sync_once():
with get_db_session() as session:
ring = Ring(address="foo")
timestamp = datetime(2024, 11, 11, 11, tzinfo=timezone.utc)
session.add(Sync(ring=ring, timestamp=timestamp))
session.commit()
assert get_last_sync(session) == timestamp
def test_get_sync_many():
with get_db_session() as session:
ring = Ring(address="foo")
first = datetime(2024, 11, 11, 11, tzinfo=timezone.utc)
second = datetime(2024, 12, 12, 12, tzinfo=timezone.utc)
session.add(Sync(ring=ring, timestamp=first))
session.add(Sync(ring=ring, timestamp=second))
session.commit()
assert get_last_sync(session) == second
def test_datetimes_have_timezones():
with get_db_session() as session:
ring = Ring(address="foo")
timestamp = datetime(2024, 11, 11, 11, tzinfo=timezone.utc)
session.add(Sync(ring=ring, timestamp=timestamp))
session.commit()
assert get_last_sync(session) == timestamp
assert timestamp.tzinfo is not None
def test_datetime_in_utc_process_bind_none():
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
assert dtiu.process_bind_param(None, dialect) is None
@given(st.datetimes())
def test_datetime_in_utc_process_bind_no_tz(ts: datetime):
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
with pytest.raises(ValueError):
dtiu.process_bind_param(ts, dialect)
@given(st.datetimes(timezones=st.timezones()))
def test_datetime_in_utc_process_bind_tz(ts: datetime):
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
result = dtiu.process_bind_param(ts, dialect)
assert result is not None
assert result.tzinfo == timezone.utc
assert ts.astimezone(timezone.utc) == result
def test_datetime_in_utc_process_result_none():
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
assert dtiu.process_result_value(None, dialect) is None
@given(st.datetimes())
def test_datetime_in_utc_process_result_no_tz(ts: datetime):
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
result = dtiu.process_result_value(ts, dialect)
assert result is not None
assert result.tzinfo == timezone.utc
@given(st.datetimes(timezones=st.timezones()))
def test_datetime_in_utc_process_tz(ts: datetime):
dtiu = DateTimeInUTC()
dialect = create_autospec(Dialect)
result = dtiu.process_result_value(ts, dialect)
assert result is not None
assert result.tzinfo == timezone.utc
assert ts.astimezone(timezone.utc) == result

30
tests/test_hr.py
View File

@ -1,15 +1,11 @@
from datetime import datetime, timezone, timedelta from datetime import datetime, timezone
from freezegun import freeze_time from freezegun import freeze_time
from hypothesis import given
import hypothesis.strategies as st
from colmi_r02_client.hr import ( from colmi_r02_client.hr import (
HeartRateLogParser, HeartRateLogParser,
HeartRateLog, HeartRateLog,
NoData, NoData,
_minutes_so_far,
) )
HEART_RATE_PACKETS = [ HEART_RATE_PACKETS = [
@ -66,6 +62,9 @@ def test_parse_until_end():
tzinfo=timezone.utc, tzinfo=timezone.utc,
) )
assert result.timestamp == expected_timestamp assert result.timestamp == expected_timestamp
assert result.size == 24
assert result.index == 295
assert result.range == 5
def test_parse_no_data(): def test_parse_no_data():
@ -139,27 +138,6 @@ def test_get_heart_rate_288_today():
assert hr == ([1] * 12) + ([0] * 276) assert hr == ([1] * 12) + ([0] * 276)
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_midnight(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, tzinfo=tz)
assert _minutes_so_far(x) == 1
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_minutes(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, 0, 15, tzinfo=tz)
assert _minutes_so_far(x) == 16
@given(hour=st.integers(min_value=-23, max_value=23))
def test_minutes_so_far_day(hour):
tz = timezone(timedelta(hours=hour))
x = datetime(2024, 1, 1, 23, 59, tzinfo=tz)
assert _minutes_so_far(x) == 1440
def test_with_times(): def test_with_times():
h = HeartRateLog([60] * 288, datetime(2024, 1, 1, 5), 0, 0, 5) h = HeartRateLog([60] * 288, datetime(2024, 1, 1, 5), 0, 0, 5)